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If you run an MSP business, choosing a remote monitoring and management (RMM) platform will be a critical business decision.

A quality RMM allows you to oversee your customers’ IT environments, remediate issues, and manage everything from patches to software updates.

In this article we will compare NinjaOne vs Atera.

Introducing NinjaOne

NinjaOne provides managed service providers (MSPs) with a wide range of tools to remotely monitor and manage their customers’ IT networks and devices. 

The platform allows you to perform all essential RMM tasks, including endpoint management, patch management, software deployment, monitoring, scripting and automation.

NinjaOne bills itself as “the world’s easiest-to-use unified IT operations platform”. 

Introducing Atera

Atera is an IT management platform that supports MSPs to monitor, manage and automate IT networks.

The company was launched in 2011 and it quickly gained reputation among cybersecurity professionals. Like NinjaOne, it is regarded as one of the major players in the RMM sector. 

With Atera, MSPs can conduct all manner of RMM activities, including ticketing, managing alerts, patch management, remote device control, helpdesk, reporting and more.

The company reports it can “unlock 10X efficiency for IT teams”. 

NinjaOne vs. Atera: Head-to-Head Comparison

NinjaOne and Atera share many features in common, but also differ in significant ways.

The following NinjaOne vs. Atera comparison table highlights key features, pricing, user experience and more. 

NinjaOne vs Atera table comparing the solutions

NinjaOne vs. Atera: Pros and Cons

To help you evaluate these two RMM tools, we’ve analyzed each platform, as well as independent reviews to highlight the strengths and weaknesses of each. 

Pros and Cons of NinjaOne

Advantages of NinjaOne include.

PROS:

  • NinjaOne is widely regarded as an easy to use and manage platform with a relatively simple learning curve.
  •  NinjaOne provides account managers for customers and customer service is generally viewed as strong and responsive.
  • NinjaOne’s scripting engine accepts multiple languages, meaning MSPs can script native commands for many different operating systems.

For an MSP, NinjaOne is a no-brainer. Best product I’ve worked with. Can’t think of any scenario where it wouldn’t be appropriate.

Verified Trust Radius User Review on NinjaOne 

On the other hand, when it comes to drawbacks of NinjaOne’s software those include:

CONS:

  • There were only 29 integrations with third-party apps.
  • NinjaOne has countless features and controls, and is also regularly pushing out more.
  •   Frequent log outs, or requires multiple MFA logins each day.

Ninja is an affordable, fairly straightforward RMM that I feel is a good fit for smaller implementations. As your client base grows and the diversity of client needs grows you can start to see some of the limitations that Ninja has.

Verified Trust Radius User Review on NinjaOne

Pros and Cons of Atera

Advantages of Atera include.

PROS:

  • Atera is a powerful platform, yet is relatively inexpensive.
  • Atera is continually being updated, and many customers praise its clear and consistent roadmap.
  • Atera provides MSPs with lightweight, easy to use tools.
.

It is great for any MSP that is growing and trying to improve efficiencies. It is not charged per endpoint but per technician so great for a company growing endpoints but not technicians as fast. 

Verified MSP Review on Atera 

Drawbacks of Atera include.

CONS:

  • Atera is an excellent option for smaller companies, but as they grow, firms sometimes want a more powerful and comprehensive feature set.
  • Like NinjaOne, Atera provides MSP users with a fairly limited number of integrations – just 15 at the time of writing.
  • Some Atera customers report that the learning curve is relatively steep, and they wish there was more documentation to help guide usage.

The licensing is suited more for a small team, or where the ratio of admins to systems is very great. Price increases, plus our team expanding caused us to shop around. We were also unhappy with the patch management that was provided.

Verified Atera Review

Use Cases & Considerations

Choosing between NinjaOne and Atera can be challenging since they offer many similar features. Here’s list of use cases and crucial need-to-know before settling on an RMM.

NinjaOne

✅ Best for:

✔ MSPs and IT teams needing a robust, scalable RMM solution.

✔ Organizations looking for advanced automation and remote monitoring.

✔ IT admins requiring granular control over patching and endpoint management.

❌ Not suitable for:

✖ Small businesses looking for budget-friendly, unlimited device management.

✖ IT teams preferring an all-in-one PSA + RMM solution.

✖ Companies requiring deep built-in remote support features (requires third-party integrations).


Atera

✅ Best for:

✔ Small businesses and solo IT pros needing an affordable all-in-one RMM & PSA.

✔ IT teams managing unlimited endpoints with fixed per-technician pricing.

✔ Organizations looking for built-in ticketing, remote access, and automation tools.

❌ Not suitable for:

✖ Large IT teams needing deep customization and granular patch management.

✖ Enterprises requiring advanced security and compliance reporting.

✖ Companies needing extensive third-party integrations beyond basic IT tools.

NinjaOne vs. Atera: Which Is Right For You? 

Deciding between NinjaOne and Atera can be tricky since they share many functionalities in common.

Ultimately, your choice of MSP tool will depend on your specific circumstances, budget, customers and other requirements.

But the following considerations can help narrow down your choice. 

Your MSP Business Size

While both Atera and NinjaOne can be used by companies of any size, Atera is associated with smaller companies.

Whether you’re a one-person-band or a small team, Atera offers the simplicity and affordability many SMEs look for. 

NinjaOne is a little more feature rich and comprehensive.

This means it might be more suited to medium and large MSPs. 

Your Budget

In most cases, Atera will be the less expensive option. MSP users pay a flat rate per user per month.

With NinjaOne, pricing is calculated depending on the number of devices monitored and can cost around $3-$4 per device.

If you’re overseeing several customers’ networks, then this can rapidly add up. 

Features Needed

NinjaOne provides MSP users with a larger number of features and controls than Atera.

If you need especially granular control of your environment, then NinjaOne could be the way to go.

That said, many MSPs stick to the main tools and rarely, if ever, need more advanced features. 

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Heimdal®: A Better Alternative to NinjaOne and Atera

Like I said in the beginning of the article, there are other alternatives available to CrowdStrike and SentinelOne that you might want to check out, such as Heimdal®, that brings you everything you need to be well protected in one place.

Heimdal® stands out a comprehensive solution for remote monitoring and management.

The platform empowers you with a wide range of RMM features, while offering much more advanced security than NinjaOne and Atera.

If you’re offering security as part of your MSP service, then Heimdal® gives you comprehensive tools to keep your customers’ systems protected. 

The easy to use tool brings you several key features that make RMM easier, including:

  • Network security;
  • Vulnerability management;
  • Privileged access management;
  • Endpoint security;
  • Threat hunting;
  • Endpoint management;
  • Email and collaboration security.

NinjaOne vs Atera – Frequently Asked Questions (FAQ)

Comparing NinjaOne vs. Atera? Read our FAQs to find answers to your questions. 

Which is better for small businesses?

Atera is ideal for small teams with its per-technician pricing, while NinjaOne offers better scalability and advanced features for growing businesses.

Who has better patch management?

NinjaOne provides granular patch control and automation, while Atera offers a simpler, more automated approach but with fewer customization options.

Which has better integrations?

NinjaOne supports more security and IT management tools, while Atera focuses on PSA, remote access, and billing integrations.

Which is easier to use?

Atera is simpler and beginner-friendly, while NinjaOne offers more customization but has a steeper learning curve.

Which is more affordable?

Atera’s per-technician pricing is cost-effective for unlimited devices, while NinjaOne’s per-device model suits larger, feature-focused IT teams.

Do Atera and NinjaOne offer good cybersecurity tools?

Atera and NinjaOne do not directly market themselves as cybersecurity solutions.

That being said, they do offer several features that support cybersecurity management, including patch reminders, alerts and ticket management.

However, for more comprehensive cyber risk management, opt for a security-focused solution such as Heimdal

Author Profile

Cristian Neagu

CONTENT EDITOR

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Cristian is a Content Editor & Creator at Heimdal®, where he developed a deep understanding of the digital threat landscape. His style resonates with both technical and non-technical readers, proof being in his skill of communicating cybersecurity norms effectively, in an easy-to-understand manner.

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